BtaEX6043429 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019839 | LTBP1
Description
Bos taurus latent transforming growth factor beta binding protein 1 (LTBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103091]
Coordinates
chr11:15676636-15730214:+
Coord C1 exon
chr11:15676636-15676803
Coord A exon
chr11:15728335-15728559
Coord C2 exon
chr11:15729946-15730214
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTTTCCCGTTATAGTAA
3' ss Score
9.06
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGAGTAACCACACTGGCCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAGCTGTCAGAACAGCTGTGAGAAGGGGAACACCACCACTCTCATTAGTGAGAATGGTCACGCTGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
Seq A exon
TAATTTGCCATCTTCCATGTATGAATGGAGGCCAGTGCAGTTCGAGGGACAAATGCCAGTGCCCTCCAAATTTCACAGGGAAGCTCTGTCAGATCCCAGTCCACGGGGCCAGCCTGCCTAAAGTGTATCAGCATTCCCAGCAGTCAGGCAAGGCGTTGGGAACACATGTTGTCCACTCGACACATACTTTGCCTCTGACCATGACCAGCCAGCAAGGAGTAAAAG
Seq C2 exon
TGAAATTTCCTCCTAACATAGTCAATATCCATGTGAAGCACCCTCCCGAGGCCTCGGTCCAGATACATCAGGTTTCAAGAGTTGATGGCCCAACAGGTCAGAAGGTTAAAGAAGCTCAACCGGGCCAGTCCCAAGCCCCTTACCAAGGCCTTCCTGTCCAGAAGACCCAGACGGTCCATTCCTCATACCAGCAAGTCATTCCTCACGTGTATCCGGTGGCTGCTAAGACCCAGCTGGGCCGGTGCTTCCAGGAAACCATTGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019839-'24-11,'24-10,26-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.289 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=35.5)
C2:
PF0068312=TB=PU(2.5=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGTGAGAAGGGGAACAC
R:
CGTGAGGAATGACTTGCTGGT
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]