DreEX6054095 @ danRer10
Exon Skipping
Gene
ENSDARG00000056922 | ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-091202-8]
Coordinates
chr17:22999733-23015984:+
Coord C1 exon
chr17:22999733-22999900
Coord A exon
chr17:23011470-23011673
Coord C2 exon
chr17:23015725-23015984
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGTTTGTGTTTTAGTTG
3' ss Score
10.58
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TGGGGAACCACACAGGCCGGATCAAGGTGGTCTTCACTCCGACTATCTGCAAGATGACCTGCACCAACGGCCGCTGTCAGAACAGCTGTCAGAAGGGAAACACCACCACTATCATCAGTGAGAACGGACACGCCACCGACACGCTCACCGCCCCCAACTTCAGAGTTG
Seq A exon
TTGTTTGCCATTTGCCCTGCATGAATGGTGGAAAATGCAGCGCTCGGGATAAGTGCCAGTGCCCGCCAAACTTTACTGGAAAATTCTGCCAAATGGCGAGTCCAAATGGTCACCAGGGGCAGCATACTGTTGTAAATGGGCAGAAGACACATGTCCACTCAACACACACGTTACCCCTCACTTATGGCACTGGACAAAACCAAG
Seq C2 exon
GTATGGTGAATGTCCATGTGAAACATCCTCCTGAAGCCTCGGTCCAGATTCATCAGGTGTCTCCAGTGGACAGTAATGGACAAGTGAAGAACACGCAGTCCAGCCATTCCTTCACCTACCACAGCAGCAGCCAGAGCATCCAGCATGGGCACACTCACAGTGGTGTCATTTACCCCAACCAGCAAACATACCTCCAATACCAGCCTGTCACATCCAAGAGCCAACTAGGACGCTGCTTCCAGGAGACTACCGGAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056922-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.478 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=39.1)
C2:
PF0068312=TB=PU(2.6=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCAAGATGACCTGCACC
R:
ATGACACCACTGTGAGTGTGC
Band lengths:
293-497
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]