MmuEX6079401 @ mm10
Exon Skipping
Gene
ENSMUSG00000001870 | Ltbp1
Description
latent transforming growth factor beta binding protein 1 [Source:MGI Symbol;Acc:MGI:109151]
Coordinates
chr17:75179037-75227241:+
Coord C1 exon
chr17:75179037-75179204
Coord A exon
chr17:75225156-75225380
Coord C2 exon
chr17:75226967-75227241
Length
225 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTTTTTCCTTTTCAGTTA
3' ss Score
12.47
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGAGTAACCACACTGGTCGCATCAAGGTGGTCTTTACTCCGAGCATCTGTAAAGTGACCTGCACCAAGGGCAACTGTCAGAACAGCTGCCAGAAGGGGAATACCACCACTCTCATTAGTGAGAACGGCCATGCAGCCGACACCCTGACAGCCACGAACTTCCGAGTGG
Seq A exon
TTATTTGCCATCTTCCGTGTATGAATGGTGGCCAGTGCAGTTCAAGGGACAAATGTCAGTGCCCTCCAAATTTCACAGGAAAGCTTTGCCAGATCCCTGTCCTTGGTGCCAGTATGCCCAAACTCTACCAGCACGCCCAGCAGCAGGGCAAGGCATTGGGGAGTCACGTCATCCATTCCACACATACCTTGCCTCTAACCATGACTAGCCAGCAAGGGGTCAAAG
Seq C2 exon
TGAAATTCCCCCCCAACATAGTCAATATCCATGTGAAACATCCTCCCGAGGCTTCTGTCCAGATACACCAGGTTTCCAGGATTGACAGCCCAGGAGGCCAGAAGGTGAAGGAAGCCCAACCAGGCCAGTCCCAAGTCTCTTACCAAGGACTTCCGGTCCAGAAGACCCAGACAGTCCATTCTACGTACTCCCACCAGCAGCTTATTCCCCATGTGTATCCCGTGGCTGCTAAGACACAACTTGGCCGATGCTTCCAGGAAACCATTGGATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001870-'13-20,'13-18,18-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.118 C2=0.304
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=35.5)
C2:
PF0068312=TB=PU(2.3=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAACAGCTGCCAGAAGG
R:
CTGCTGGTGGGAGTACGTAGA
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types