GgaEX0015626 @ galGal3
Exon Skipping
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32470817-32494060:-
Coord C1 exon
chr3:32493893-32494060
Coord A exon
chr3:32473800-32474024
Coord C2 exon
chr3:32470817-32471094
Length
225 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGTTTTTGTTTCAGTTA
3' ss Score
11.46
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TGGGAAATCACACTGGTCGCATCAAGGTGGTCTTTACACCCAGCATCTGCAAAGTGACTTGTACCAAGGGCAACTGTCAGAACAACTGTGAGAAGGGAAATACCACCACCCTCATCAGTGAGAATGGCCATGCTGCTGACACGCTGACAGCCACTAACTTCCGAGTAG
Seq A exon
TTATTTGCCACCTTCCCTGCATGAATGGAGGCCAGTGCAGTTCTAGAGATAAATGCCAGTGCCCTCCTAATTACACCGGCAAACTTTGTCAGATCCCCGTGCAGAATGGCAATACTCCAAAACTGTACCATCACCCACAACAAGTGAATAAGGCTGTAGGATCACAGATTATCCACTCAACTCATACTTTACCACTGACAATGTCTGGACAGCAAGGTGTAAAAG
Seq C2 exon
TGAAGTTCCCTCCTAACATAGTGAATATCCATGTGAAACATCCCCCTGAAGCTTCAGTTCAGATTCATCAAGTTTCAAGAATTGACAGTGCATCAACAGGACAAAAATCGAAAGTACCTCAGCCAGGACATCCACAGGTCTCTTACCAAGGTCTTCCGTATCAGAAGACCCAGAAAGGACATGCTACTTACACAAATCAACAACCCATTCCTCATGTGTTTCCTGTTTCAGTTAAAACTCAGCTTGGACGCTGCTTCCAGGAGACTATTGGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-'4-12,'4-11,5-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=0.276 C2=0.505
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=35.5)
C2:
PF0068312=TB=PU(2.3=1.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTGACAGCCACTAACTT
R:
ATAGTCTCCTGGAAGCAGCGT
Band lengths:
297-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]