RnoEX0051373 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108504377-108506247:-
Coord C1 exon
chr6:108506104-108506247
Coord A exon
chr6:108504888-108505079
Coord C2 exon
chr6:108504377-108504460
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGGACTTCCGTCACACACAGCTC
3' ss Score
4.55
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGAGCTCATGCTGGCAGTGTGTGGGGATGCACTCTGCGAGAACGTGGAAGGCTCCTTCCTGTGCCTTTGTGCCAGTGACCTTGAGGAGTATGATGCAGAAGAAGGACACTGCCGTCCTCGGGTGGCTGGAG
Seq A exon
CTCAGAGAATCCCAGAGGTCCCAACAGAGGAGCAGGCTGCAGGCCTTACCGGCATGGAGTGCTATGCTGAACACAATGGTGGTCCTCCATGCTCTCAAATCTTGGGCCAGAACTCCACACAGGCTGAGTGCTGCTGCACCCAGGGTGCCAGATGGGGGGAAACCTGTGATCCCTGCCCATCTGAGGACTCAG
Seq C2 exon
TTGAATTCAGTGAGCTGTGCCCCAGTGGTCAAGGTTACATCCCAGTGGAAGGGGCCTGGACATTTGGACAAGCCATGTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'42-35,'42-34,43-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.7)
A:
PF0068312=TB=PU(85.4=53.8)
C2:
PF0068312=TB=PD(12.2=17.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACGAGTGTGAGCTCATG
R:
TGGCTTGTCCAAATGTCCAGG
Band lengths:
218-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]