GgaEX0015302 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40343931-40344700:-
Coord C1 exon
chr5:40344557-40344700
Coord A exon
chr5:40344123-40344314
Coord C2 exon
chr5:40343931-40344011
Length
192 bp
Sequences
Splice sites
3' ss Seq
CCTGTTCCACTGTCTTCTAGAGG
3' ss Score
9
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATGTGAACGAGTGTGAGCTAATGGTGGCCGTGTGTGGGACCGCACTCTGTGAGAACGTGGAGGGATCATTCCTGTGCCTGTGCCCCAGCGACCATGAGGAGTACGACACAGAGGCAGGGCAGTGTCGGCCACGGGCAGCCGTGG
Seq A exon
AGGGCCCTGAGAGACACACAGCCCAACCCTCTGACAGCATGGAGCGCAAGCAGTGCTACTACCACATCAGCGACGTTCGCCTGTGTGACAGCGTCCTGGCCAAGAACGTCACGAAGCAGGAGTGCTGCTGCACCGTGGGGGCAGCCTGGGGTGACAACTGTGAGACCTACCCCTGCCCCATCTTGGGCACAG
Seq C2 exon
TGGAGTATCAAGAGATCTGCCCTCTTGGGAAGGGCTATGTTCCTCAAGAAGATCCACTCTCAGGAAAAGTCTCCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'34-35,'34-34,36-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.123 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=77.8)
A:
PF0068312=TB=PU(86.4=58.5)
C2:
PF0068312=TB=PD(11.4=17.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAACGAGTGTGAGCTAATGG
R:
AGGAGACTTTTCCTGAGAGTGGA
Band lengths:
218-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]