BtaEX6055053 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86191926-86193318:-
Coord C1 exon
chr10:86193175-86193318
Coord A exon
chr10:86192129-86192320
Coord C2 exon
chr10:86191926-86192009
Length
192 bp
Sequences
Splice sites
3' ss Seq
GGGGCGTCTGTCACACACAGGTC
3' ss Score
6.18
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACGTGAACGAGTGTGAGCTCATGCTGGCGGTGTGCGGGGCGGCGCTCTGCGAGAACGTGGAGGGCTCTTTCCTGTGCCTCTGCGCCAGCGACCTGGAGGAGTACGACGCTCAGGAGGGCCGCTGCCGCCCGCGAGGGGCTGGAG
Seq A exon
GTCCGAGTGTCCCTGAGGCCCGGCCAGGGGCACACCCACCAGGCCCTGTCCGCATGGAATGCTACTCTGGACAGAAGGACCAGACGCCCTGCTCCAGCCTTCTGGGCCGGAACACCACGCAGGCCGAGTGCTGCTGCACCCAGGGCACCGGCTGGGGAGATGCCTGTGACCTGTGCCCAGATGAGGACTCAG
Seq C2 exon
TCGAGTTCAGCGAGATCTGCCCTAGTGGGAAAGGCTACATCCCTGTGGAAGGAGCCTGGATGTTTGGACAGACCACGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=85.7)
A:
PF0068312=TB=PU(85.7=55.4)
C2:
PF0068312=TB=PD(11.9=17.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAACGAGTGTGAGCTCAT
R:
CTGTGTACGTGGTCTGTCCA
Band lengths:
227-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]