RnoEX0051384 @ rn6
Exon Skipping
Gene
ENSRNOG00000020813 | Ltbp3
Description
latent transforming growth factor beta binding protein 3 [Source:RGD Symbol;Acc:62057]
Coordinates
chr1:221108872-221109602:+
Coord C1 exon
chr1:221108872-221109000
Coord A exon
chr1:221109222-221109344
Coord C2 exon
chr1:221109480-221109602
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTCTTCCATGCAGACA
3' ss Score
11.02
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
ACCTAAACGAGTGCGCCAAGCCTCATCTGTGTGGTGACGGTGGCTTCTGCATCAACTTTCCTGGTCACTACAAATGCAACTGCTATCCTGGCTACCGGCTCAAGACCTCACGACCACCCGTTTGCGAAG
Seq A exon
ACATCGACGAATGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTATCGCAGCCAGGGGGGCGGAGCCTGTCGTG
Seq C2 exon
ATATCAACGAATGCTCCGAGGGGAGCCCCTGCTCTCCTGGATGGTGTGAGAACCTCCCGGGCTCTTACCGTTGCACGTGTGCCCAGGGATACGAGCCCGCACTGGATGGCCTCAGTTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020813-'17-26,'17-25,19-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAAACGAGTGCGCCAAG
R:
TATGCAACTGAGGCCATCCAG
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]