GgaEX1034375 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40346486-40347971:-
Coord C1 exon
chr5:40347849-40347971
Coord A exon
chr5:40347425-40347550
Coord C2 exon
chr5:40346486-40346608
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGTTCCCACTGCAGATG
3' ss Score
11
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGCAGACCTTGCTATTCAGTGCCTGGGGGGAGCATGCCGGAACACACTGGGCTCCTACGAGTGCCACTGCCAGGCTGGATTCGAGCTCATCAATGGCACCGTGTGCCAAG
Seq A exon
ATGTGAATGAGTGCCTGAACAGTGAGATCTGCAGCCCCAATGGTGAGTGTCTCAACAGCCACGGATCCTACTTCTGCATCTGTGCGCCTGGCTTCTCCAGCTCAGATGGAGGAGTCAACTGCCAAG
Seq C2 exon
ATGTGGATGAATGTACAGACAAATCCCGGTGCTCACAAGGCCAGTGCCTGAACACAGAAGGCTCCTACAGGTGTCTGTGTGAAAATGGGTTCAAACACTCCCAGGAGACTGATGACTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGAATGTGCAGACCT
R:
TGCAGTCATCAGTCTCCTGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]