GgaEX1034375 @ galGal4
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr5:37218109-37219175:-
Coord C1 exon
chr5:37219053-37219175
Coord A exon
chr5:37218629-37218754
Coord C2 exon
chr5:37218109-37218240
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGACTCTGTTCCCACTGCAGATG
3' ss Score
11
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGCAGACCTTGCTATTCAGTGCCTGGGGGGAGCATGCCGGAACACACTGGGCTCCTACGAGTGCCACTGCCAGGCTGGATTCGAGCTCATCAATGGCACCGTGTGCCAAG
Seq A exon
ATGTGAATGAGTGCCTGAACAGTGAGATCTGCAGCCCCAATGGTGAGTGTCTCAACAGCCACGGATCCTACTTCTGCATCTGTGCGCCTGGCTTCTCCAGCTCAGATGGAGGAGTCAACTGCCAAG
Seq C2 exon
ATGTGGACGAATGTAAGGAATATGGGGATGCCATCTGTGGCACGTGGCGGTGCCAGAACAGCCTGGGCTCCTACCGTTGTATCATGGGCTGCCAGCCTGGCTTCCACTGGACACCCCCGGGTGACTGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258_MULTIEX1-6/7=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
ENSGALT00000016690fB9102
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGAATGTGCAGACCT
R:
CAATGCAGTCACCCGGGG
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]