BtaEX6055049 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86195463-86196320:-
Coord C1 exon
chr10:86196198-86196320
Coord A exon
chr10:86195949-86196074
Coord C2 exon
chr10:86195463-86195585
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACCTGCTCATCTGCCTGCAGATG
3' ss Score
10.9
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAAGACCCCCAGAGCAGCTGCCTGGGAGGCGAATGCAAGAACACGGCTGGCTCCTACCAGTGCCTCTGTCCCCCGGGCTTCCAGCTGGCCAATGGCACGGTGTGTGAGG
Seq A exon
ATGTGGACGAGTGTGTGGGCGAGGAGTACTGCGCACCGCGCGGCGAGTGCCTCAACAGCCACGGGTCCTTCTTCTGTCTCTGTGCTGACGGCTTCGTCAGTGCAGATGGGGGTACCAGCTGCCAAG
Seq C2 exon
ATGTGGACGAGTGTGCAGTCACTGACCGGTGTCTCGGGGGCCAGTGTGTCAACACCGACGGCTCCTTCAACTGTGTGTGTGAGACTGGCTTCCAGCCCTCCCCAGAGAGCGGGGAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'31-30,'31-29,32-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACGAGTGTGAAGACCC
R:
ACACACTCCCCGCTCTCTG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]