MmuEX0027259 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84790995-84791944:-
Coord C1 exon
chr12:84791822-84791944
Coord A exon
chr12:84791597-84791722
Coord C2 exon
chr12:84790995-84791117
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCCATCTTGCCCCTGCAGACG
3' ss Score
11.15
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAAGGTCCCCAAAGCAGCTGCCGGGGAGGCGAATGCAAGAACACAGAAGGTTCCTACCAATGCCTCTGTCACCAGGGCTTCCAGCTGGTCAATGGCACCATGTGTGAGG
Seq A exon
ACGTGAATGAGTGTGTTGGGGAAGAGCATTGTGCTCCTCACGGCGAGTGCCTCAACAGCCTGGGCTCCTTCTTCTGCCTCTGTGCACCCGGCTTTGCTAGTGCTGAGGGGGGCACCAGATGCCAGG
Seq C2 exon
ATGTTGATGAATGTGCAGCCACAGACCCGTGTCCGGGAGGACACTGTGTCAACACAGAGGGCTCCTTCAGCTGTCTGTGTGAGACTGGCTTCCAGCCCTCCCCAGACAGCGGAGAATGTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'39-40,'39-38,41-40
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGTGAAGGTCCC
R:
AAACATTCTCCGCTGTCTGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types