RnoEX0051370 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108511842-108512757:-
Coord C1 exon
chr6:108512635-108512757
Coord A exon
chr6:108512408-108512533
Coord C2 exon
chr6:108511842-108511964
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCCCATCTTGCCCCTACAGATG
3' ss Score
11.57
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAAGGTCCCCAGAACAGCTGCCTGGGAGGCGAGTGCAAGAACACAGATGGTTCCTACCAGTGCCTCTGTCCCCAGGGCTTCCAGCTGGCCAATGGCACCGTGTGTGAGG
Seq A exon
ATGTGGACGAATGTGTTGGGGAAGAACACTGCGCTCCTCATGGCGAATGCCTCAACAGCCCGGGGTCCTTCTTCTGTCTCTGTGCACCCGGCTTTGCTAGTGCTGAGGGGGGCACCAGATGCCAGG
Seq C2 exon
ATGTTGATGAATGTGCAACCACAGAGCCGTGTCTGGGAGGACACTGTGTCAACACCGAGGGCTCCTTCAACTGTCTGTGTGAGACTGGCTTCCAGCCCGCCCCAGACAGTGGAGAGTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'36-29,'36-28,37-29
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGTGAAGGTCCC
R:
ACACACTCTCCACTGTCTGGG
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]