RnoEX0051412 @ rn6
Exon Skipping
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84118046-84119864:-
Coord C1 exon
chr1:84119484-84119864
Coord A exon
chr1:84119022-84119098
Coord C2 exon
chr1:84118046-84118461
Length
77 bp
Sequences
Splice sites
3' ss Seq
CCTACCCGTGTTCTCTGCAGGAG
3' ss Score
10.51
5' ss Seq
TGTGTACGT
5' ss Score
3.32
Exon sequences
Seq C1 exon
ATGATTTTGAGGCTCTTTGCAATGTGCTGCGCCCACCTGCTTATGGCCCGCCACGCCCGGGTGGCTTTGGACTTCCTTATGAATATGGCCCAGATATAGGCCCACCTTATCAGAGTCTCCCCTATGGGCCAGATCTGTATCCACCACCTGTGCTACCCTATGACCCCTACCCACCCCCACCTGGACCTTTTGCTCGCCGGGAGGCCCCTTATGGTGCCCCGCCCTTCGAAATGCCGGACTTTGAGGATGATGGTGACCCCTATGGCGAGACTGAGGCTCCTGACCCACCAAGCCGAGGCACTGGTTGGCCATATCGGTCCAGAGACACCCGTGGCTCCTTCCCAGAGCCTGAGGAATCCTCTGAGCGTGGAAGCTATACAG
Seq A exon
GAGCCTTGTCTGAGCCCTATGAGGGCCTAGAGGCCGAGGAGTGTGGTATCCTGGATGGCTGCGCCCACGGCCGCTGT
Seq C2 exon
ACATCAACGAGTGTGACGAGGCTGAGGCAACCTCCCCACTCTGCGTCAATGCGCGCTGTGTCAACACTGATGGTTCCTTCCGCTGTATTTGCCGTCCGGGATTTGCACCCACGCACCAACCACATCACTGTGCGCCTGCTCGACCTCGGGCCTGAGCAGCTGCGTGCGCCTAGCCTCCCATTATAACTGAGCACTAGGAGCTTCCAGAGTGCACCTAGCCTTCCTCTAGTCTGCATGTGTGTGAGGATGTCAGACAGTCTCGATGTAGGATGGACGGACACAGAGGGGTGCCTTCTATGGCACCAGTTCATCATGCCTAGCCCCTCCCACCAGTGCCCTGGGCCTGTCCTGGGTTCCCTGACACATTTCTTGCCCTTTTATACAATTTTCAATTAAACCACCTATTTTGTACTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871-'47-43,'47-42,48-43
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=3.9)
A:
PF146701=FXa_inhibition=WD(100=65.4),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=84.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGGTCCAGAGACACCCG
R:
AATCCCGGACGGCAAATACAG
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]