GgaEX1034369 @ galGal3
Exon Skipping
Gene
ENSGALG00000010258 | LTBP2
Description
NA
Coordinates
chr5:40339397-40342459:-
Coord C1 exon
chr5:40342184-40342459
Coord A exon
chr5:40341817-40341966
Coord C2 exon
chr5:40339397-40339539
Length
150 bp
Sequences
Splice sites
3' ss Seq
ACACCCTTGCCGCCCTCCAGGTC
3' ss Score
9.65
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
CTGATTTTGCTTTCCTCTGTAATGGAGCCAGTGAAGACAGTGACAGAGGGGCTGAGGTCCGAGAAAGACCTAGGTATGAATACGGACCAGGCTTGGAAGATCCCCACTATGGCCTTCCCAGCCCAGACATGGGCCCCTACTACAACTACCTGGAGTCAGAGTATGGAAACCCTGATGTGGCTTTCCCTCGGAGAGAACTGAGCAGTGAGTTTCGTGGCAGCCCTTTCCACCATGGCCCAGGGCGGCCCCCACCCCGCTACCTGCCCAGCCAACCCG
Seq A exon
GTCTTTACGAGGGCTTTGAAGGGCTGCAGGCTGAGGAGTGTGGCATTCTCAATGGCTGTGAGAACGGACGTTGCGTGCGCGTCCCAGAGGGCTACACCTGTGACTGCTTCGATGGCTACCAGCTGGACATGACCCTCATGGCCTGTGTGG
Seq C2 exon
ACATCAATGAGTGCGAGGACGTGGATGTCCCAGTGCCCCTGTGCCAGGGCGGCACCTGCGAGAACACAGAAGGCTCCTACCGCTGCCGCTGCTTACCAGGCTATGTGGCACTGGCCCAGCCCCACCACTGCGTGCCCCAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010258-'42-42,'42-40,43-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=5.4)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(41.5=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF062476=Plasmod_Pvs28=FE(57.3=100),PF0764510=EGF_CA=WD(100=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCCCTACTACAACTACC
R:
CCACATAGCCTGGTAAGCAGC
Band lengths:
255-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]