MmuEX0027246 @ mm9
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:86124162-86126435:-
Coord C1 exon
chr12:86126154-86126435
Coord A exon
chr12:86125704-86125853
Coord C2 exon
chr12:86124162-86125345
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGACTCTCTATTAGAAC
3' ss Score
7.1
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTCTACGCTCAGCTGTGCAACGTGGCTCGGATTGAGGCAGAGCGCGGAGCAGGGATCCACTTCCGGCCAGGCTATGAGTATGGCCCTGGCCTGGACGATCTGCCTGAAAACCTCTACGGCCCAGATGGGGCTCCCTTCTATAACTACCTAGGCCCCGAGGACACTGCCCCTGAGCCTCCCTTCTCCAACCCAGCCAGCCAGCCGGGAGACAACACACCTGTCCTTGAGCCTCCTCTGCAGCCCTCTGAACTTCAGCCTCACTATCTAGCCAGCCACTCAG
Seq A exon
AACCCCTGGCCTCCTTCGAAGGCCTTCAGGCTGAGGAATGTGGCATCCTGAATGGCTGTGAGAATGGCCGCTGCGTGCGTGTGCGGGAGGGCTACACTTGCGACTGCTTTGAGGGCTTCCAGCTGGATGCGGCCCACATGGCCTGTGTGG
Seq C2 exon
ATGTGAACGAGTGTGAAGACTTGAACGGGCCTGCAGCACTCTGTGCACACGGTCACTGTGAGAACACAGAGGGTTCCTATCGCTGCCACTGTTCGCCAGGTTACGTGGCAGAGCCAGGCCCCCCACACTGTGCGGCCAAGGAGTAGAAGTGAGGGCTTGTGTGGGCAGCTATCTGGAAAATGGCTTCAGCCATAGGCCGTGGACTTAAGATTGCTTCCCTAGCTGGGAAGACATCGCGCTGGGAAGATGACGTGATGACATCAGGCCCGGGCTCTGGACCCAGTTCTGCCAGCCTTGCCAAATTTTTATTTCTTCCAGCTTAACTCTGGGTGTGAGCTTCCATCACTGCCTCTATGCCATTGCTTGGCTCAGACACCACAAATATCTTAATGCTTCAGCCACTGGCCATGAGACACGCCCACCAGTCTGTCCCCGGGACCACACTATAGGGCACTCATCAGGCTGTGCTCTTAGGCTGTGCAAACATTGCAGGTACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'42-40,'42-39,43-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=5.3)
A:
PF0000822=EGF=WD(100=58.8),PF062476=Plasmod_Pvs28=PU(42.0=66.7),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACACCTGTCCTTGAGC
R:
CCAGATAGCTGCCCACACAAG
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: