MmuEX0027246 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84783212-84785485:-
Coord C1 exon
chr12:84785204-84785485
Coord A exon
chr12:84784754-84784903
Coord C2 exon
chr12:84783212-84784395
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTGACTCTCTATTAGAAC
3' ss Score
7.1
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGGTCTACGCTCAGCTGTGCAACGTGGCTCGGATTGAGGCAGAGCGCGGAGCAGGGATCCACTTCCGGCCAGGCTATGAGTATGGCCCTGGCCTGGACGATCTGCCTGAAAACCTCTACGGCCCAGATGGGGCTCCCTTCTATAACTACCTAGGCCCCGAGGACACTGCCCCTGAGCCTCCCTTCTCCAACCCAGCCAGCCAGCCGGGAGACAACACACCTGTCCTTGAGCCTCCTCTGCAGCCCTCTGAACTTCAGCCTCACTATCTAGCCAGCCACTCAG
Seq A exon
AACCCCTGGCCTCCTTCGAAGGCCTTCAGGCTGAGGAATGTGGCATCCTGAATGGCTGTGAGAATGGCCGCTGCGTGCGTGTGCGGGAGGGCTACACTTGCGACTGCTTTGAGGGCTTCCAGCTGGATGCGGCCCACATGGCCTGTGTGG
Seq C2 exon
ATGTGAACGAGTGTGAAGACTTGAACGGGCCTGCAGCACTCTGTGCACACGGTCACTGTGAGAACACAGAGGGTTCCTATCGCTGCCACTGTTCGCCAGGTTACGTGGCAGAGCCAGGCCCCCCACACTGTGCGGCCAAGGAGTAGAAGTGAGGGCTTGTGTGGGCAGCTATCTGGAAAATGGCTTCAGCCATAGGCCGTGGACTTAAGATTGCTTCCCTAGCTGGGAAGACATCGCGCTGGGAAGATGACGTGATGACATCAGGCCCGGGCTCTGGACCCAGTTCTGCCAGCCTTGCCAAATTTTTATTTCTTCCAGCTTAACTCTGGGTGTGAGCTTCCATCACTGCCTCTATGCCATTGCTTGGCTCAGACACCACAAATATCTTAATGCTTCAGCCACTGGCCATGAGACACGCCCACCAGTCTGTCCCCGGGACCACACTATAGGGCACTCATCAGGCTGTGCTCTTAGGCTGTGCAAACATTGCAGGTACCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.510 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=5.3)
A:
PF0000822=EGF=WD(100=58.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACACACCTGTCCTTGAGC
R:
CCAGATAGCTGCCCACACAAG
Band lengths:
248-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types