HsaEX0036918 @ hg19
Exon Skipping
Gene
ENSG00000119681 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:6715]
Coordinates
chr14:74964889-74969637:-
Coord C1 exon
chr14:74969356-74969637
Coord A exon
chr14:74968144-74968293
Coord C2 exon
chr14:74964889-74967732
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCCGATTTCCTCCTCCCAGAGC
3' ss Score
8.8
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
AGGTCTATGCTCAGCTGTGCAACGTGGCTCGCATTGAGGCAGAGCGGGAGGCCGGGGTCCACTTCCGGCCAGGCTATGAGTATGGCCCCGGGCCCGATGACCTGCACTACAGCATCTATGGCCCAGATGGGGCCCCCTTCTACAACTACCTGGGCCCCGAGGACACCGTCCCTGAGCCTGCCTTCCCCAACACAGCCGGTCACTCAGCGGACCGCACACCCATCCTTGAGTCTCCTTTGCAGCCCTCAGAACTCCAGCCCCACTACGTGGCCAGCCATCCAG
Seq A exon
AGCCCCCAGCCGGCTTCGAAGGGCTTCAGGCGGAGGAGTGCGGCATCCTGAACGGCTGTGAGAATGGCCGCTGTGTGCGCGTGCGGGAGGGCTACACCTGTGACTGTTTTGAGGGCTTCCAGCTGGATGCGGCCCACATGGCCTGCGTAG
Seq C2 exon
ATGTGAATGAGTGTGATGACTTGAACGGGCCTGCTGTGCTCTGTGTCCATGGTTACTGCGAGAACACAGAGGGCTCCTACCGCTGCCACTGCTCCCCGGGATATGTGGCTGAGGCAGGGCCCCCCCACTGCACTGCCAAGGAGTAGCAGTCAGGGGTCAGTGTGGCAACTACCTGGAAATGGCCTCCAGTCACAGGCAGGGGCCTTGAGGATGATTTCCTAGCTGGGAAGACACCGTGACATCAGGCCAGAGGTTTCCAATCAGCCTTGCCTGCTTTCATCTCTCCCAGCTTAGCCTCTGGCTGTAAGCTTCGGTCATTGCCTCCATGCCCTTGCTTGGCTCAAGCACCACCAATCGCTTTAATGCTTCAGCCACCGCATGAGGCCCTGTCCACCACCTTTCCTGGCCTTGCTATGGGATGCTTACCAAAGGATGGCCCTCATCCACCCTCCCAAGCTGTGCGAGCATGCAAGGCCCCATGGCCTCACACTGCAGACACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119681_MULTIEX1-27/27=26-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=5.3)
A:
PF0000822=EGF=WD(100=58.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTACAGCATCTATGGCCC
R:
TAGGAGCCCTCTGTGTTCTCG
Band lengths:
258-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)