RnoEX0051377 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108500112-108502379:-
Coord C1 exon
chr6:108502098-108502379
Coord A exon
chr6:108501641-108501769
Coord C2 exon
chr6:108500112-108501292
Length
129 bp
Sequences
Splice sites
3' ss Seq
ACCCCTGGCTTCCTTCGAAGGCC
3' ss Score
8.05
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
AGGTCTATGCTCAGCTGTGCAATGTGGCTCGGATTGAGGCAGAGAGGGAAGCAGGGATCCACTTCCGGCCAGGATATGAGTATGGCCCTGGCCCAGATGATCTACCTGAAACCCTCTACGGCCCAGATGGAGCCCCTTTCTATAACTACCTGGGCCCTGAGGACACTGTTCCTGAGCCTCCCTTCTCCAACACAGCCAGTCATTTGGGAGACAACACACCCATCCTTGAGCCTCCTCTGCAGCCCTCTGAACTTCAGCCCCACTATATCCCCAGCCATTCAG
Seq A exon
GCCTTCAGGCTGAGGAATGTGGCATCCTGAATGGCTGTGAGAATGGCCGCTGTGTGCGTGTGCGCGAGGGCTACACTTGTGACTGCTTTGAAGGCTTCCAGCTGGATACAGCCCTCATGGCCTGTGTGG
Seq C2 exon
ATGTGAATGAGTGTGAAGACCTGAACGGGCCTGCGGCACTCTGTGCGCATGGTCACTGCGAGAACACAGAGGGTTCCTATCGCTGCCACTGTTCCCCTGGTTACGTGGCAGAGCCCGGGCCCCCACACTGTGCAGCCAAGGAGTAGGAGTGAGAGATCATGGTGGGCAGCTATGTGGAAATGGCTTCAGCCATAGGCTGGGGACTTAAGGTTGCTTCCCTAGCTGGGAAGACGTGACTGGGAAGACCCCGTGATGCCATCAGGCCAGGGCTCTGGAGCCCAGTTCCGCCAGCCTCGCCTCCTTTTTATCTCTTCCGGCTTAACTCTGGGTGTGAATTCCGTCACTGCCTCTATGCCACTGCTTGGCTCAGACACCACAAATATTTTAATGCTTTAGCCACTGGCCGTGAGACACAGCCCACAGTCTGTCCTCGGGGCCACACTTTAGAGCGCCCATCAGAAGAGTCCTCGTGCACTCCTCTTAGGCTGTGCAGACACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'50-44,'50-43,51-44
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=5.3)
A:
PF0000822=EGF=WD(100=60.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=89.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCCAACACAGCCAGTC
R:
CTACTCCTTGGCTGCACAGTG
Band lengths:
248-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]