BtaEX6055058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86186700-86189843:-
Coord C1 exon
chr10:86189475-86189843
Coord A exon
chr10:86188066-86188215
Coord C2 exon
chr10:86186700-86187620
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTCTGACTCCCTCCTCCCAGAGC
3' ss Score
8.84
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
AGGTCTACGCTCAGCTCTGCAATGTGGCCCGGATCGAAGCTGAGCGGGAGGCCGGGATCCACTTCCGGCCCGGCTATGAGTACAGCCCGGGGCCGGATGACCTGCACTATAGCCTCTACGGCCCAGACGGGGTCCCCTTCTACAACTACCTGGGCCCCGAGGACGCCATCCCCGAGCCACTCTTCCCCAGCACGGCTGGCCGCCCAGGGGACCGCATACCGCTCCCTGAGCCTCCCCTGCAGCCCTCAGAACTCCAGCCCCACTATGTGGCCAGCCACCCAGGTCTGTGTTGCTGCAAAAACGGGGAAGAGGTGGGCTCTGAAGCAGTTTCACTTCCATCTTCTCCATCTGCTCATCACTGTCAGCAGG
Seq A exon
AGCACCAGGCTGGCTTCGAAGGGCTCCAGGCAGAGGAGTGCGGCATCCTGAATGGCTGTGAGAATGGCCGCTGCGTGCGCGTGCGCGAGGGCTACACCTGTGACTGCTTCGAGGGCTTCCAGCTGGACACAGCCCACATGGCCTGTGTGG
Seq C2 exon
ATGTGAATGAGTGTGATGACCTGAATGGGCCTGCTGCGCTCTGTGTCCATGGTCACTGCGAGAACACGGAGGGCTCCTACCGCTGCCACTGCCTCCCGGGTTATGTGGCTGAGGCAGGCCCCCCACACTGCACTGCTAAGGAGTAGCAGAGACGGGTCGAGTGTGGGCAGTTACCTGGAAATGGGCCCTGGCCACAGGCGGGGCCTTGAGGAAGCTTTCCTAGCTGGGGAGATGCCATGAAGACACCGGCCGGAGGCCCTGCGGCCCAGCTCCCAGCCAGCCTCGCCTGCTTTTCATCTCCCCCAGCTTCGGCTCTTGCTATGTGAGCATCTGTCACGGCCTCCACACCACCATGCCCTTGCTTGGCTCAAACACCACCAAGTGCTTTAATGCTTCAACCACTGGCCACGAGGCCCAGTCTGCCATCTGTCCGGGCCTTGCCATGGGATGCTGATCAAAGGACGGCCCTCAACCAGCCCCTCAAGCTGTGCAAACTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'45-42,'45-41,46-42=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.6=4.0)
A:
PF0000822=EGF=WD(100=60.8),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=89.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTGCTGCAAAAACGGG
R:
GACCCGTCTCTGCTACTCCTT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]