RnoEX0052744 @ rn6
Exon Skipping
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46308036-46310724:+
Coord C1 exon
chr3:46308036-46308203
Coord A exon
chr3:46309664-46309940
Coord C2 exon
chr3:46310311-46310724
Length
277 bp
Sequences
Splice sites
3' ss Seq
TTCCTTCTTCATATTCACAGGGA
3' ss Score
8.18
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCCTGGTCAAGTTCCGAGATCTTCTTCAATGGTCCTTGGTTCATTTGGAACAGACTTGATGAGAGAGAGGAGAGATCTGGAGAGGAGAAGGGACTCCTCCATTAGCAGTCTTATGGACTATAGTCACCGGAGTGGGGATTTCACAGCTCCAGCAT
Seq A exon
GGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAG
Seq C2 exon
AAGGAGGCGAGAGGGAAGAGATGAGTCTTCAAGAATATCTCCATCAGATGTACCTCCTAGATCTCATCTTTTCAGAAGAGAATCAAATGAAGTAGTTCACCTTGAAGCACAGGGGGACTCCCTTGGGGCAGCTGCCAGCAGACCACAAGCATCCGGAGCATCAGGCAATGCTTCTGCAAGTGGATCCACACCAGATTTGCCACAGGGTGGAAGAAATACAGGAATAGCAGGGATCCTTCCTGGCTCCTTATTCCGGTTTGCAGTTCCGCCAGCACTTGGCAGTAACCTGACTGACAATGTCACGATTACCGTAGATATTATTCCTTCAGGTTGGAGTTCAGCTGATGGGAAAAGTGAAAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-'14-11,'14-10,15-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.809
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGATTTCACAGCTCCAG
R:
GCGGAACTGCAAACCGGAATA
Band lengths:
293-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]