BtaEX6009616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36697193-36703262:-
Coord C1 exon
chr2:36703110-36703262
Coord A exon
chr2:36700392-36701499
Coord C2 exon
chr2:36697193-36697362
Length
1108 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTAAAAAATAGGTG
3' ss Score
7.94
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATTCTACTTGGAGGCATAGTCAAGTTCCCAGGTCTTCATCAGTGGTACTTGGATCATTTGGAACTGACTTGATGAGAGAGAGGAGAACAGATTCCTCCATTAGTAATCTTGCGGATTATAGTCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq A exon
GTGTTCAAGACAGAGTTCCTTCTTCATATTCACAAGGAGCAAGACCAAAAGAGAACTCATTGAGCACTTTACAATTGAGTGCATCATCTACTAACCACCAAATGCCTTCTGAACATCAAACCATACCATGTTCTAGGGACTCTGGTAGAAATTCTTTAAGATCAAATTTTTCTCCAAGAGAATTAGAATCTCCCCAAAGCAGTATGCAGCCTGGATTTTCTTATACTTCAAATAGAGGTGAAACCTCAACTATAGGCAGTTCAGATAGGATTAACTCATCTCACAGATCATTTCAAGAATCTTCTGACAATGAAGGTAGACGCACAACAAGGAGATTGCTGTCACGTATAGCTTCTAGTATGTCATCTACTTTTTTTTCACGAAGGTCTAATCAAGACTCCTTGAATACAAGGTCATTGAGTTCTGAAAATTCTTATGTTTCTCCAAGAATCTTGACAGGTTCTCAGTCTCGTGGTAATGCAGCATCAGCCTCTGATATTCCTGATAATAGGGCATCCGAAGCTTCTCAGGGATTTCGATTTCTTCGGCGAAGGTGGGGTTTGTCATCTCTTAGCCAAAATCATAACTCTGAGCCAGATTCCCAAAATTTTAGCCAAGAATCTGAAGGCAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGACGAGATGAATCTTCAAGGATATCTACCTCTGATATACCATCTAGATCTCATCATCTTTTTAGAAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAGTGAGCCCCTTGGGGCTGGTGCCAACAGACCGCAGGCATCTGCAGCACCAAGCAGTGTTGGTACAGGTGACTCCCCCTCAGATTCAACTCGGAGCGGACGAAGTACAGGGATAACGGGGATCCTTCCTGGTTCCTTATTTCGATTTGCAGTGCCCCCAGCACTTGGAAATAATTTGACTGATAATGTTATGATCACTGTAGATATTATTCCTTCAGGGTGGAGTTCATCTGATGGAAAAAATGATAAAACTAAAAATGTACCTTCAAGAGACCCAGAAAGACTACAGAAAATAAAAGAGAG
Seq C2 exon
CCTCCTTTTAGAGGACTCTGAAGAAGAAGAAGGTGATTTATGTAGAATTTGTCAGATGGCAGCTGCATCATCCTCTAACTTGCTGATAGAGCCATGCAAGTGCACCGGAAGTTTACAGTATGTCCACCAAGAGTGTATGAAGAAATGGTTACAGGCCAAAATTAACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.904 A=0.823 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGGAGGCATAGTCAAGTTCC
R:
CAGAGTTAATTTTGGCCTGTAACCA
Band lengths:
318-1426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]