GgaEX1035128 @ galGal4
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:17393]
Coordinates
chr7:36199164-36200699:+
Coord C1 exon
chr7:36199164-36199955
Coord A exon
chr7:36200124-36200277
Coord C2 exon
chr7:36200530-36200699
Length
154 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTCGCTTTTCAGTGC
3' ss Score
11.39
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAG
Seq A exon
TGCCTCCAACATTAGGAAGCAGTCTATCTGACAATCTTATGATAACTGTAGATATTATTCCTTCTGGCTGGAGTCAGTCTGATGGACAAGAAAGTGACAAGTCCAAAATACCACCTTCAAGAGATCCAGAAAGACTGCAGAAAATTAAAGAGAG
Seq C2 exon
CTTGCTTTTAGAAGATTCTGAGGATGAAGAGGGTGACCTATGCAGAATCTGTCAGATGTCCTCTGCAAGTACTGACAACAATTTAATAGAGCCGTGCAAATGCACTGGAAGTCTGCAGTATGTTCACCAGGAGTGCATGAAAAAATGGCTGCAGTCCAAGATTAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.842 A=0.692 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAAAGCTACAGACCAGA
R:
AGGACATCTGACAGATTCTGCA
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]