GgaEX1035128 @ galGal3
Exon Skipping
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38336231-38340078:+
Coord C1 exon
chr7:38336231-38336395
Coord A exon
chr7:38338543-38339656
Coord C2 exon
chr7:38339909-38340078
Length
1114 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTTCTTGCAACAGATT
3' ss Score
9.33
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ATTCCTCTTGGAGATATAGTAGGATTCCTAGATCTTCATCTGTGATGTTTGGTTCCCTGGGAACTGAGCTAGTGAGAGAGCGAAGAGAGTTAGAAAGAACAGATCAGTCCTTTAATAATCTGGTGGATCATAGCTACAGGAACAGTGACTTTTCATCTTCAGCAT
Seq A exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAGGTGAGGAGACCTCTCTTGAAGCATCAGATGGCCCCCCTAGGGCTTCTGTTAGCAGACCACCAACACCTGCAGTATCTGGTATTCCTACAGCTACTGCCTCCCCACCAGATTCAGCCCACAATAGGCGAAGTTCTGGAATTCTGCCTAGTTCTCTCTTTCGCTTTTCAGTGCCTCCAACATTAGGAAGCAGTCTATCTGACAATCTTATGATAACTGTAGATATTATTCCTTCTGGCTGGAGTCAGTCTGATGGACAAGAAAGTGACAAGTCCAAAATACCACCTTCAAGAGATCCAGAAAGACTGCAGAAAATTAAAGAGAG
Seq C2 exon
CTTGCTTTTAGAAGATTCTGAGGATGAAGAGGGTGACCTATGCAGAATCTGTCAGATGTCCTCTGCAAGTACTGACAACAATTTAATAGAGCCGTGCAAATGCACTGGAAGTCTGCAGTATGTTCACCAGGAGTGCATGAAAAAATGGCTGCAGTCCAAGATTAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584-'6-11,'6-10,9-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.820 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCTTGGAGATATAGTAGGATTC
R:
CTGAATTAATCTTGGACTGCAGCC
Band lengths:
334-1448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]