MmuEX6101486 @ mm10
Exon Skipping
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60232200-60236926:+
Coord C1 exon
chr2:60232200-60232367
Coord A exon
chr2:60233899-60234210
Coord C2 exon
chr2:60236754-60236926
Length
312 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCTTTCAAAAATAGATG
3' ss Score
7.81
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATTCTTCTTGGAGGCATAGTCAAGTTCCCAGATCTTCATCAATGGTACTTGGTTCATTTGGAACAGACTTGATGAGAGAAAGGAGAGATTTGGACAGGAGAAGAGAGTCCTCCATCAGCAATCTTATGGATTATAATCACCGAAGTGGTGATTTCACAACTTCATCAT
Seq A exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCAGTGAGCACTTTACAGTTGAATTCATCATCCACCAATCACCAATTGCCTTCTGACCATCAGACAGTACCAAGTTCTAGGGACTCCAGTAGAAGTTCTTTCAGATCACATTTTTCTCCAAGACAATCAGAATCTTTTCGCAACAGTTCACATCCTGCATTTTCATATTTTTCAAGTAGAAATGAAACTCCAACTATAAGCAATTCAGAAAGGGGTTCATCTCAGAGACCATATCGAGAATCTTCTGACAATGAAG
Seq C2 exon
CCTCCTTTTAGAGGACTCTGATGATGAAGAAGAAGGGGACTTATGTAGAATTTGTCAGATGGCAGCAGCGTCATCATCTAATTTATTGATAGAGCCGTGCAAATGCACAGGGAGCCTGCAGTACGTCCATCAAGAGTGTATGAAAAAGTGGTTACAAGCCAAAATTAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977_MULTIEX1-2/8=1-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.965 A=0.816 C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF129062=RINGv=PU(76.8=72.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGGCATAGTCAAGTTCCC
R:
CAGAATTAATTTTGGCTTGTAACCAC
Band lengths:
334-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types