RnoEX0052745 @ rn6
Exon Skipping
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46309664-46312603:+
Coord C1 exon
chr3:46309664-46309940
Coord A exon
chr3:46310640-46310724
Coord C2 exon
chr3:46312431-46312603
Length
85 bp
Sequences
Splice sites
3' ss Seq
CGTAGATATTATTCCTTCAGGTT
3' ss Score
6.05
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAG
Seq A exon
GTTGGAGTTCAGCTGATGGGAAAAGTGAAAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
Seq C2 exon
CCTCCTCTTAGAGGACTCTGATGAAGAAGAAGAAGGGGACTTATGTAGAATTTGCCAGATGGCAGCAGCGTCATCATCTAATTTATTGATAGAGCCATGCAAATGCACTGGGAGTCTGCAGTATGTCCATCAAGAGTGTATGAAGAAGTGGTTACAGGCCAAAATTAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241-'15-13,'15-12,16-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.809 C2=0.068
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF129062=RINGv=PU(76.8=72.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTCGTCTCAGAGACCATT
R:
TACTGCAGACTCCCAGTGCAT
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]