RnoEX0052985 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33472323-33491389:+
Coord C1 exon
chr3:33472323-33473531
Coord A exon
chr3:33473633-33473724
Coord C2 exon
chr3:33491316-33491389
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCTTTGGATTTGATTTTAAGATT
3' ss Score
5.43
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AAGGTGATAAAATTCTGGAGGAAAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAATGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTCCTAGAGGGGCAGTCTCCAGGCTCTTCGAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGTCCCTCCGATGCTAAAAGCATTAGTAGTGAAGACGACCTAAGGAATCCAGACTCCCCCTCTTCTCATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
Seq A exon
ATTCTTCATGACTCATTGAGGTCTCACAAGCTTCTGGAGCATAAAATGAAGAGGGGATGGTTATAGTCACCAAAGTGTCATATTGCCAAGGG
Seq C2 exon
GTGGAGCCCGAGAAGTTGAAGACACTCACAGAAGGTTTAGAAGCCTACAGCCGAGTCCGGAAAAGGAGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.143 C2=0.907
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
PF0085512=PWWP=PD(18.4=40.9)
C2:
PF0085512=PWWP=FE(29.3=100)
Main Inclusion Isoform:
ENSRNOT00000034632fB8459
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGTTGGCGACTTGGTC
R:
GGACTCGGCTGTAGGCTTCTA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]