RnoEX0052984 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33467689-33491389:+
Coord C1 exon
chr3:33467689-33467909
Coord A exon
chr3:33472323-33473531
Coord C2 exon
chr3:33491316-33491389
Length
1209 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCTATTCATTTAAGGTG
3' ss Score
8.83
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCGATATGTCATCCATAAACAGTTCTCTGAATAACCATCAACTGACTCACCTACAGTCACTGCTAAACAGCAGTCAGATGTTTCCTCCGAGTCAGCAGCAGCCGCCGCCGCAGCCGCACCTTCTCCAGGGACAGCAGAATCTCCAGGCCTTCCAAGGACAACCCACAGTCCTTTGCCCAGCTAACAATAACCCCATGGCATGTCTGTTTCAGAACTTCCAG
Seq A exon
GTGAGGATGCAAGGAGATGCAGCTCTTCTAAATAAGAGAATAAACAGTCAGCCGGGGCTCACAGCACTTCCTGAGAACCCAAACCTTGCACTTCCACATTTCCAAGATACACCTTGTGAGCTGCAGCCAAGGATTGACCCGTCTCTTGGTCAGCCCATGAAGGACGGCCTCGTTATGGGTGGCCAAGGCGATGCCTCCGTAGACGCCATTTACAAAGCAGTTGTGGATGCAGCCAGCAAAGGAATGCAGGTTGTCATCACCACTGCTGTGAACAGCACCACTCAAATCAGCCCTATCCCAGCCCTGAGCGCCATGAGTGCCTTCACTGCCTCCATTGGTGACCCACTAAATCTGTCCAGTGCTGTGAGCGCCGTCATCCATGGGCGGAACATGGGAGGAGCGGATCACGACAGCAGGCTGAGGAATGCGAGAGGGGCGCGGCTACCCAAGAACATAGACCATGGGAAAAACTCTGGTGAAGGAGACGGGTTTGAGTGTTACAAGTCAGCGAGCTGCCACACATCCAGAAAACAATGGGATGGAGAGCAAAGTCCCAGAGGGGAGCGTAACAGGTGGAAATATGAGGAGTTTTTAGATCATCCAGGCCATATCCACAATAGTCCTTGTCATGAAAGGCCCAACAATGTCTCCACACTGCCATTTCTAGCTGGGGAACAGCACCCAATACTGTTACCACCAAGAAACTGTCAAGGTGATAAAATTCTGGAGGAAAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAATGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTCCTAGAGGGGCAGTCTCCAGGCTCTTCGAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGTCCCTCCGATGCTAAAAGCATTAGTAGTGAAGACGACCTAAGGAATCCAGACTCCCCCTCTTCTCATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
Seq C2 exon
GTGGAGCCCGAGAAGTTGAAGACACTCACAGAAGGTTTAGAAGCCTACAGCCGAGTCCGGAAAAGGAGCAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.598 A=0.514 C2=0.907
Domain overlap (PFAM):
C1:
NO
A:
PF0085512=PWWP=PU(46.3=9.4)
C2:
PF0085512=PWWP=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATATGTCATCCATAAACAGTTCT
R:
TTCTGCTCCTTTTCCGGACTC
Band lengths:
294-1503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]