BtaEX6009922 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47814154-47830258:-
Coord C1 exon
chr2:47830050-47830258
Coord A exon
chr2:47825070-47826278
Coord C2 exon
chr2:47814154-47814227
Length
1209 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTATTTCTTTAAGGTG
3' ss Score
9.19
5' ss Seq
AAGGTATAC
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
Seq A exon
GTGAGAATGCAGGAAGATGCAGCTCTCCTAAACAAAAGAATAAGCACTCAGCCGGGGCTCACAGCACTTCCCGAAAATCCAAACACTACACTTCCACCTTTCCAAGACACCTCTTGTGAGTTGCAGTCGAGGATTGACCCATCTCTAGGTCAGCAGGTGAAGGATGGCCTCATCATGGGGGGCCAAGGCGATGCTTCCGTAGATGCTATTTACAAAGCAGTCGTGGATGCAGCCAGCAAAGGGATGCAGGTTGTCATCACCACTGCTGTCAACAGTACAACTCAGATCAGCCCCATTCCAGCTCTGAGTGCCATGAGTGCCTTCACTGCTTCCATCGGTGACCCATTAAGTCTCCCCAGTGCTGTCAGTGCGGTCATTCACGGACGAAACATGGGCAGTGTGGATCACGATGGGCGGCTGAGGAGTGCGAGAGGGGCTCGGCTGCCTAGCAGTCTGGACCACGGGAAGAACTCCAGCGAAGGAGATGGCTTTGAATATTTCAAATCAGCAGGTTGCCACACATCTAAAAAACAGTGGGATGGGGAGCAAAGCCCTGGAGGGGAGCGAAACAGGTGGAAGTGTGAGGAATTTTTAGATCATCCAGGCCACATCCACAATAGTCCTTGTCACGAAAGGCCCAACAATGTCTCTACACTGCCATTTCTGCCTGGGGAACAGCACCCAATACTGTTACCACCGAGAAACTGTCAAGGGGATAAGATTTTGGAGGAGAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAGGAGAGACTAGAGAACACTGTGGAAAGATGCGCACACATTAACGGGAACAGATCTCGGCAGAGTCGGGGCTTTGGAGAGCTGCTGAGCACCACAAAGCAAGACTTTGTCCTAGAGGAGCAATCTCCGAGCTCCTCCAATAGTTTGGAGAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAACATTAACGGGTGTGTACCTAGCCCTTCAGACGCTAAAAGCATTAGTAGTGAAGATGACCTAAGGAACCCAGACTCCCCCTCTTCAAATGAATTGATCCCTTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTAGTCAGAGAAGACGACGTTCACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAG
Seq C2 exon
GTGGAGCCCGAGAAGTTGAAGACACTAACGGAAGGTTTAGAAGCCTACAGCCGAGCCCGGAAAAGGAACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.550 A=0.490 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0085512=PWWP=PU(46.3=9.4)
C2:
PF0085512=PWWP=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATGCCCTCAATAAACAGT
R:
TTCTGTTCCTTTTCCGGGCTC
Band lengths:
282-1491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]