GgaEX6043211 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34185187-34193639:+
Coord C1 exon
chr7:34185187-34185398
Coord A exon
chr7:34186949-34188157
Coord C2 exon
chr7:34193566-34193639
Length
1209 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTACTTGTTTCAGGTG
3' ss Score
10.75
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
Seq A exon
GTGAGAATGCAGGAAGATGCTGCTGCCCTGAACAAAAGAATGATCACTCAGATGGGAATGGCACCAGTTCCTGAGAGCTCCAACGCTATGCTTCCTCCTTTCCAAGAAACATCTTGTGATTTGCAGCAAAGAACTGAACCATCTCTTGGTCAACAGGCAAAGGATAACCTCAATGTCGCTGCTCAGGGTGATACATCAGTGGATGCGATCTACAAAGCAGTCGTAGATGCTGCAAGCAAAGGAATGCAAGTAGTGATCACCACTGCCGTTAGCAGTACCACACAGATGAGTCCCATTCCAGCTTTGAGTGCCATGAGTGCCTTCACAGCCTCAATTGGTGACCCGCTAAATCTCTCTAGTGCTGTCAGTGCAGTAATCCATGGAAGAAACATTGCTGTTTCTGATCATGAAGGTAGGATAAGAAACACTAGAGGAACGCGAGTACTGAAGAATTCGGAGCATGGTAAAAATTCAAGTGAAGGGGATGGGTATGAATATTACAAATCAACAAGTTGTAACACGCCCAAAAAACAGTGGGAAGGGGAGCAAAGTCCTGTCGGTGAGATAAATAGGTGGAAATGTGAGGAGTTTCTAGACCACTCCACCCATATCCATAGTAGTCCTTGTCACGAAAGGCCCAATAACATCTCCACACTGCCATTATTGCAAGGTGAGCAGCATCAGATACTGTTATCACAGAGAAACTGTCAAAGTGATAAAATGTTGGAGGAGAATTTCAGGTATAACAATTACAAAAGAACTATGATGAGTTTTAAGGAAAGACTGGAGAACACTGTGGAACGCTGTGCACACATAAATGGAAATAGGCCTCAGCAGAACAGAGGATACGGGGAGTTGCTGAACACTTCTAAACAAGACCTGATTCTGGAAGAGCAATCTCCAAGTTCCTCAAATAGTTTGGAAAGTTCGTTAGTTAAAGACTACATCCATTACAATGGAGATTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGCCCTTCAGATGCTAAAAGCATCAGTAGTGAAGATGACCTAAGGAATCCAGATTCCCCTTCTTCAAATGAGCTGATACATTACAGGCCGAGGACGTTCAATGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCATGGCCTGGAAAACTAGTAAGAGAAGAAGACGTTCACAATTCATGTCAACAGAACGCTGAGGAGGGGAAG
Seq C2 exon
GTGGAGCCAGAGAAGTTGAAGACACTAACAGAAGGTCTAGAAGCTTACAACCGAGCCAGGAAAAGGAACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'19-16,'19-13,22-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=0.514 C2=0.920
Domain overlap (PFAM):
C1:
NO
A:
PF0085512=PWWP=PU(46.3=9.4)
C2:
PF0085512=PWWP=FE(29.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGAATAACCATCAACTGAGTCA
R:
TTCTGTTCCTTTTCCTGGCTCG
Band lengths:
262-1471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]