DreEX0045286 @ danRer10
Exon Skipping
Gene
ENSDARG00000059581 | mbd5
Description
methyl-CpG binding domain protein 5 [Source:ZFIN;Acc:ZDB-GENE-070209-125]
Coordinates
chr6:38686-47162:+
Coord C1 exon
chr6:38686-38788
Coord A exon
chr6:45286-46276
Coord C2 exon
chr6:47087-47162
Length
991 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTCTGCGTTCATCAGGGA
3' ss Score
8.1
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCCCAGCGGATCAGTGCTGTCCTGTCTCGAGCAGGTCAAGTCTTACCTGCTGACCGATGGCACCTGTAAATGTGGTCTGGAATGTCCACTCATCCTCCCGAAG
Seq A exon
GGATGTGTGTCTGAGAGCGGGCAGCCTGGCGTGGCGTCGCTCTCTGGAGAAGCGGGCATGTACCGCGAGGGGCAGCAGAAGCTGCAGGGAGACGTGCCTGTGGTGCCAGGAGGTCAGGGGTCGGTGGAGTCAGTGGATGCCATCTACAGGGCGGTGGTGGATGCGGCGGGCAAAGGTGTGCACGTGACCATCACCAGCGGTGTAAGCGGCTCCACGCAGGCCAGCCCTGTGCCGGCGCTCAGTGCCATGAATGCCCTTCACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAGCAGCGACGCCGCAGACGGGCACCAGTTCTTCCGCTCGCCCAGTGCCGCCACGCCACGAGCACAGTGGGATGAGCCTGGCCTCTGGAGGAGCGAGGAGTTTCTGGAGTGCTCCACGGCGGTGCCTAGTGGGCGAGCGGAGCGGCAGTGCCCAGCAGATCAGCCGCAGACCCACGAGCTCCCCGACACCCACACTGATGATGCCAGTCTGCGCTTCAACCACCGCGCCGGCACGGGCATGAGAGAGCGACTGGAGCCGGCGGAGCGGTGCCCGCAGCTGAACGGCTCGCTCGCCCGTGCCGGGTACGGGGATCCGCTGACCGCTGAGGACCAGTCGCCCGGCTCCTCCACCAGTTTGGATGGCCCGCTCCTCAAAGACTACACCCACTTCAACGGGCACTTTAATGGGCACTGCGCACCCAGCCCCTCCGACACCAAGAGCCTGAGCAGCGAGGAGGAGCTGCGGCACCCGGACTCGCCCTCCGCTGACCTGCTGCACTACAGGCCACGCCCCTACAACATGGGTGAGCTGGTCTGGCCAATCACAGGCTTCCCTGCCTGGCAGAATAAGCTGGCAGATGAACATGGGCGCAATCCCAGCATGCAGCTGGCAGAGCAGGCCAAG
Seq C2 exon
GGCCGGAAAGCTGAACCATCATCTAGAAGCTGCGATTCACGAGGCCATGAGCGAGCTAGACAAGATGTCTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059581_MULTIEX1-4/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142914=MBD=FE(47.9=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]