RnoEX0052981 @ rn6
Exon Skipping
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33472323-33501000:+
Coord C1 exon
chr3:33472323-33473531
Coord A exon
chr3:33491316-33491389
Coord C2 exon
chr3:33500925-33501000
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTGGTTTGGTGTTTACTCAGGTG
3' ss Score
6.09
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AAGGTGATAAAATTCTGGAGGAAAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAAGAGAGACTAGAGAGTACTGTGGAGAGATGTACACACATTAATGGAAACAGACCTCGTCAGAGTCGGGGCTTTGGAGAGCTGCTAGGCACTGCAAAACAAGACCTAGTCCTAGAGGGGCAGTCTCCAGGCTCTTCGAATAGTTTGGAAAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGTCCCTCCGATGCTAAAAGCATTAGTAGTGAAGACGACCTAAGGAATCCAGACTCCCCCTCTTCTCATGAGTTGATACACTATAGACCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTCATAAGAGAAGACGACGTTCACAATTCATGCCAACAAAGCCCCGAGGAAGGGAAG
Seq A exon
GTGGAGCCCGAGAAGTTGAAGACACTCACAGAAGGTTTAGAAGCCTACAGCCGAGTCCGGAAAAGGAGCAGAAA
Seq C2 exon
AAGTGGGAAGCTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAAAATGTCTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596-'14-22,'14-20,18-22
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.907 C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
PF0085512=PWWP=FE(29.3=100)
C2:
PF0085512=PWWP=PD(22.0=69.2)
Main Skipping Isoform:
ENSRNOT00000034632fB8459
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTCTGGGGCCAAATCAA
R:
TTTGTCCAGTTCGCTCATGGC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]