BtaEX0021545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47804934-47826278:-
Coord C1 exon
chr2:47825070-47826278
Coord A exon
chr2:47814154-47814227
Coord C2 exon
chr2:47804934-47805009
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTCTTCATGCCTTCACTCAGGTG
3' ss Score
7.61
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
AAGGGGATAAGATTTTGGAGGAGAATTTCAGGTATAATAACTACAAAAGAACTATGATGAGTTTTAAGGAGAGACTAGAGAACACTGTGGAAAGATGCGCACACATTAACGGGAACAGATCTCGGCAGAGTCGGGGCTTTGGAGAGCTGCTGAGCACCACAAAGCAAGACTTTGTCCTAGAGGAGCAATCTCCGAGCTCCTCCAATAGTTTGGAGAGTTCTCTGGTCAAAGACTACATCCATTACAATGGAGACTTTAATGCCAAAAACATTAACGGGTGTGTACCTAGCCCTTCAGACGCTAAAAGCATTAGTAGTGAAGATGACCTAAGGAACCCAGACTCCCCCTCTTCAAATGAATTGATCCCTTATAGGCCAAGGACGTTCAACGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCCTGGCCTGGAAAATTAGTCAGAGAAGACGACGTTCACAGTTCTTGTCAACAAAGCCCCGAGGAAGGGAAG
Seq A exon
GTGGAGCCCGAGAAGTTGAAGACACTAACGGAAGGTTTAGAAGCCTACAGCCGAGCCCGGAAAAGGAACAGAAA
Seq C2 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATTCATGAGGCCATGAGTGAACTGGACAAAATGTCTGGGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'13-17,'13-16,15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
PF0085512=PWWP=FE(29.3=100)
C2:
PF0085512=PWWP=PD(22.0=69.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGTCTGGGGCCAAATC
R:
TGTCCAGTTCACTCATGGCCT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development