GgaEX1035297 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34186949-34197372:+
Coord C1 exon
chr7:34186949-34188157
Coord A exon
chr7:34193566-34193639
Coord C2 exon
chr7:34197270-34197372
Length
74 bp
Sequences
Splice sites
3' ss Seq
GTGTTCATACCTTCACTCAGGTG
3' ss Score
7.58
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAGTGATAAAATGTTGGAGGAGAATTTCAGGTATAACAATTACAAAAGAACTATGATGAGTTTTAAGGAAAGACTGGAGAACACTGTGGAACGCTGTGCACACATAAATGGAAATAGGCCTCAGCAGAACAGAGGATACGGGGAGTTGCTGAACACTTCTAAACAAGACCTGATTCTGGAAGAGCAATCTCCAAGTTCCTCAAATAGTTTGGAAAGTTCGTTAGTTAAAGACTACATCCATTACAATGGAGATTTTAATGCCAAAAGCATTAATGGGTGTGTGCCTAGCCCTTCAGATGCTAAAAGCATCAGTAGTGAAGATGACCTAAGGAATCCAGATTCCCCTTCTTCAAATGAGCTGATACATTACAGGCCGAGGACGTTCAATGTTGGCGACTTGGTCTGGGGCCAAATCAAAGGACTGACTTCATGGCCTGGAAAACTAGTAAGAGAAGAAGACGTTCACAATTCATGTCAACAGAACGCTGAGGAGGGGAAG
Seq A exon
GTGGAGCCAGAGAAGTTGAAGACACTAACAGAAGGTCTAGAAGCTTACAACCGAGCCAGGAAAAGGAACAGAAA
Seq C2 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATACACGAGGCCATGAGTGAGCTAGACAAAATGTCTGGGAATGTAAGTTTCTTTTCATGTTGGCAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=0.920 C2=0.529
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PU(46.3=9.4)
A:
PF0085512=PWWP=FE(29.3=100)
C2:
PF0085512=PWWP=PD(22.0=51.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATTACAGGCCGAGGACGT
R:
GGCCTCGTGTATAGCAGCTTC
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]