DreEX0045287 @ danRer10
Exon Skipping
Gene
ENSDARG00000059581 | mbd5
Description
methyl-CpG binding domain protein 5 [Source:ZFIN;Acc:ZDB-GENE-070209-125]
Coordinates
chr6:45286-47162:+
Coord C1 exon
chr6:45286-46276
Coord A exon
chr6:46363-46436
Coord C2 exon
chr6:47087-47162
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGCTGGACTCTGCAGGTG
3' ss Score
8.62
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
CTAGTGGGCGAGCGGAGCGGCAGTGCCCAGCAGATCAGCCGCAGACCCACGAGCTCCCCGACACCCACACTGATGATGCCAGTCTGCGCTTCAACCACCGCGCCGGCACGGGCATGAGAGAGCGACTGGAGCCGGCGGAGCGGTGCCCGCAGCTGAACGGCTCGCTCGCCCGTGCCGGGTACGGGGATCCGCTGACCGCTGAGGACCAGTCGCCCGGCTCCTCCACCAGTTTGGATGGCCCGCTCCTCAAAGACTACACCCACTTCAACGGGCACTTTAATGGGCACTGCGCACCCAGCCCCTCCGACACCAAGAGCCTGAGCAGCGAGGAGGAGCTGCGGCACCCGGACTCGCCCTCCGCTGACCTGCTGCACTACAGGCCACGCCCCTACAACATGGGTGAGCTGGTCTGGCCAATCACAGGCTTCCCTGCCTGGCAGAATAAGCTGGCAGATGAACATGGGCGCAATCCCAGCATGCAGCTGGCAGAGCAGGCCAAG
Seq A exon
GTGGAGCCGGAGCAGCTGAAAACACTAACACATGACCTGCAGGCGCTGGACCGAGCCAGCAAGAAGAGCCGGAA
Seq C2 exon
GGCCGGAAAGCTGAACCATCATCTAGAAGCTGCGATTCACGAGGCCATGAGCGAGCTAGACAAGATGTCTGGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059581_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGGGTGAGCTGGTCTG
R:
CTTGTCTAGCTCGCTCATGGC
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]