RnoEX0057063 @ rn6
Exon Skipping
Gene
ENSRNOG00000049236 | Myh9
Description
myosin, heavy chain 9 [Source:RGD Symbol;Acc:3140]
Coordinates
chr7:119011567-119013567:-
Coord C1 exon
chr7:119013453-119013567
Coord A exon
chr7:119012979-119012984
Coord C2 exon
chr7:119011567-119011760
Length
6 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCATTCTCCACCTAGAAT
3' ss Score
9.36
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGACTATAAGGCCGATGAGTGGCTGATGAAGAACATGGACCCTCTGAACGACAACATTGCCACCCTGCTTCACCAGTCCTCAGACAAGTTTGTCTCTGAGCTGTGGAAGGATG
Seq A exon
AATCAG
Seq C2 exon
TGGATCGAATCATTGGCTTGGACCAGGTGGCTGGAATGTCTGAGACAGCGCTACCCGGTGCCTTCAAGACTCGGAAGGGCATGTTCCGTACTGTGGGGCAGCTGTACAAGGAGCAGCTGGCCAAGCTCATGGCCACACTGAGGAATACCAATCCCAACTTTGTCCGCTGCATCATTCCCAACCACGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049236-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(0.3=100)
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
ENSRNOT00000037611fB9203
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCACCAGTCCTCAGACA
R:
GCTGTCTCAGACATTCCAGCC
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]