DreEX0048416 @ danRer10
Exon Skipping
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5242712-5249521:-
Coord C1 exon
chr3:5249407-5249521
Coord A exon
chr3:5246543-5246548
Coord C2 exon
chr3:5242712-5242899
Length
6 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTTTCCTTCATTTAGAGC
3' ss Score
10.3
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGGACTATAAGGCAGACGAGTGGCTGATGAAGAACATGGACCCGCTGAATGATAACGTGGCCACTTTACTCAACCAGTCCACGGATAGATTTGTGTCTGAGCTGTGGAAAGACG
Seq A exon
AGCCAG
Seq C2 exon
TGGACCGCATCGTGGGTCTGGATAAAGTTGCTGGGATGTCGGAGCTGCCGGGAGCCTTTAAGACTCGTAAGGGAATGTTCCGGACGGTCGGGCAGCTTTATAAAGAGCAGCTCTCCAAACTCATGGCCACGCTCAGAAACACCAACCCAAACTTTGTCCGCTGCATCATTCCCAACCACGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.5=100)
A:
PF0006316=Myosin_head=FE(0.3=100)
C2:
PF0006316=Myosin_head=FE(9.0=100)
Main Inclusion Isoform:
ENSDART00000092373fB4041
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGGCCACTTTACTCAACC
R:
CTCCGACATCCCAGCAACTTT
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]