MmuEX0030386 @ mm10
Exon Skipping
Gene
ENSMUSG00000022443 | Myh9
Description
myosin, heavy polypeptide 9, non-muscle [Source:MGI Symbol;Acc:MGI:107717]
Coordinates
chr15:77781322-77783503:-
Coord C1 exon
chr15:77783389-77783503
Coord A exon
chr15:77782908-77782913
Coord C2 exon
chr15:77781322-77781515
Length
6 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCATTCTCCACCTAGAAT
3' ss Score
9.36
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGACTATAAAGCTGACGAGTGGCTGATGAAGAACATGGACCCCTTGAACGACAACATCGCCACGCTGCTTCACCAGTCCTCAGACAAGTTTGTCTCTGAGCTGTGGAAGGATG
Seq A exon
AATCAG
Seq C2 exon
TGGATCGGATCATTGGCTTGGACCAAGTGGCTGGAATGTCCGAGACAGCACTACCTGGTGCCTTCAAGACCCGGAAGGGCATGTTCCGTACTGTCGGACAGCTGTACAAGGAGCAGCTGGCCAAGCTCATGGCCACGTTGAGGAATACCAACCCCAACTTCGTGCGCTGCATCATTCCCAACCATGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022443-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(0.3=100)
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
ENSMUST00000016771fB2599
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCACCAGTCCTCAGACA
R:
GTGCTGTCTCGGACATTCCAG
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types