HsaEX0040975 @ hg38
Exon Skipping
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36306414-36309396:-
Coord C1 exon
chr22:36309282-36309396
Coord A exon
chr22:36308808-36308870
Coord C2 exon
chr22:36306414-36306607
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTAACCTCTCTGTTGCAGAGA
3' ss Score
9.02
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGATTACAAAGCTGACGAGTGGCTGATGAAGAACATGGATCCCCTGAATGACAACATCGCCACACTGCTCCACCAGTCCTCTGACAAGTTTGTCTCGGAGCTGTGGAAGGATG
Seq A exon
AGATGCAGAGCACTCAGAGAGCCTATTTCTATCATCGCTTTCCTATTCTCCACCTAGAACCAG
Seq C2 exon
TGGACCGCATCATCGGCCTGGACCAGGTGGCCGGCATGTCGGAGACCGCACTGCCCGGGGCCTTCAAGACGCGGAAGGGCATGTTCCGCACTGTGGGGCAGCTTTACAAGGAGCAGCTGGCCAAGCTGATGGCTACGCTGAGGAACACGAACCCCAACTTTGTCCGCTGCATCATCCCCAACCACGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(3.0=100)
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
ENST00000216181fB4481
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTCTCGGAGCTGTGGA
R:
CTCCTTGTAAAGCTGCCCCAC
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development