BtaEX0023450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75115383-75118019:-
Coord C1 exon
chr5:75117905-75118019
Coord A exon
chr5:75117416-75117478
Coord C2 exon
chr5:75115383-75115576
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTTAACCTCTCTGTTGCAGAGA
3' ss Score
9.02
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTGGATTACAAAGCCGATGAGTGGCTGATGAAGAACATGGACCCGCTGAATGACAACATCGCCACATTGCTGCACCAGTCCTCTGACAAGTTTGTCTCGGAGCTGTGGAAGGATG
Seq A exon
AGATGCAGAGCACCCAGAGAGCCTATTTCTATCAGCGCTTTCCTATCCTCCACCTAGAACCAG
Seq C2 exon
TGGACCGCATCATTGGCCTGGACCAGGTGGCTGGCATGTCGGAGACGGCAATGCCTGGGGCCTTCAAGACGCGCAAAGGCATGTTCCGCACCGTGGGGCAGCTGTACAAGGAGCAGCTGGCCAAACTCATGGCCACGCTGAGGAACACCAACCCCAACTTCGTCCGCTGCATCATCCCCAACCACGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(3.0=100)
C2:
PF0006316=Myosin_head=FE(9.4=100)
Main Inclusion Isoform:
ENSBTAT00000013737fB4523
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTCTCGGAGCTGTGGA
R:
CAGCTGCTCCTTGTACAGCTG
Band lengths:
146-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development