RnoEX0057361 @ rn6
Exon Skipping
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89156039-89167018:+
Coord C1 exon
chr17:89156039-89156079
Coord A exon
chr17:89157189-89157332
Coord C2 exon
chr17:89166898-89167018
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTCTGTGTGTTCATTTGCAGTCA
3' ss Score
9.49
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAGTCAACCCAAGAAGAAAAACGAAGACCAAGAAAAGACAG
Seq A exon
TCAAGGAAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAACTTTTTCCCACTCATTTCGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACAGGAGGAACCCCAGGATCAGCGCATTGAGAGTAATGAGAG
Seq C2 exon
GTGTTGGACCGCTTCAGAGAGTGAGATCCCTGAGGAAGAGAGGATTTCAGCCAACCCTTATGATTACAGGAGGCTCCTGCGCAAAACCTCCCAGCGGCAGCGCCTCCTGCAGCAGTTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.510 C2=0.525
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAACCCAAGAAGAAAAACGA
R:
CTACAACTGCTGCAGGAGGC
Band lengths:
162-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]