DreEX6093880 @ danRer10
Exon Skipping
Gene
ENSDARG00000010186 | myo3a
Description
myosin IIIA [Source:ZFIN;Acc:ZDB-GENE-041026-4]
Coordinates
chr24:6133214-6141667:-
Coord C1 exon
chr24:6141627-6141667
Coord A exon
chr24:6134217-6134399
Coord C2 exon
chr24:6133214-6134000
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTCTAAACCACCAGCCC
3' ss Score
5.67
5' ss Seq
GAGGTGAAA
5' ss Score
2.91
Exon sequences
Seq C1 exon
AGGTCTGTCCAGGACGATAAAAGGAGGCCGCGGAAACAAAG
Seq A exon
CCCAAAAAAGTTGGACAACGATGACCAATACTACCAGGGTTTGTCCAGCAGTAAATCCACCAGCCTTCCCAATGAACGACGCCGGTCGAGCAAGCGGAGGGCTTCTGATGAAAGACGCTCCTCTGAAAGACCACTCTCTGATGTCCCCAAATCTGAAATCCCCAAAGACCCATTGGAGAAGAG
Seq C2 exon
GCACTCGTTCTCTAAAATGCCCTCTACAGAGAGTCAAAGCGAGGACAACCCCTACGACTACAGGAAGATACTGAGAAAGACCTCCCAGAGACGACGACTAATAACACAGCCATAACCCCGAACATCATCTTCTTTGAAGACTTGTGTAAATATGTCATTTCAAACCTATAAGACTGGCATTCTTGCATGGAACACAAAAGAAGACATTTGGAATAATGTACCTGCTGCTCTTTTCCATGTCATTTCAAGCATCGAGAATAGAAGCTTTTGCTCTTCAACAAAACGGTGCTTGATTCATCAAAGATTCATTCTTTTGAATCAGATGAGATGATTCGTTCCCAAATCAAACTGATCCAATTGCAGCTTACTAAAGAGGAAGATTATCGTTTTGGGGTGATCTGTGTTTTTTTTAAGTAATACACAGGTTTTCTGTTCACTTATTGTTATTATTTTTGTTGGTTTTACCAAAGAACTTTTGCATTATTAAACAAAAACTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010186-'42-38,'42-37,43-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAAAGGAGGCCGCGGAAA
R:
AGAGCAGCAGGTACATTATTCCA
Band lengths:
257-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]