MmuEX6099204 @ mm10
Exon Skipping
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22601110-22618252:+
Coord C1 exon
chr2:22601110-22601150
Coord A exon
chr2:22602119-22602262
Coord C2 exon
chr2:22618049-22618252
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGTTCATTTGCAGTCA
3' ss Score
8.93
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAG
Seq A exon
TCAAGGGAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAATTTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAGAG
Seq C2 exon
GTGTTGGACCACCTCAGAGAATGAGAGCCTGGAGGAAGAGAGGATTTCAGCCAACCCTTATGACTACAGGAGGCTCCTGCGCAAAACCTCCCAGCGGCAGCGCCTGGTGCAGCAGTTGTAGCTCACCTACGGAGCTTCAGAAAGTGAAGCAAGGATCAAAGCAGCAGCAGGGTAACCTCTCAAACAGGACCGCACAGGCGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.510 C2=0.575
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAACCCAAGAAGAAAAACGGA
R:
CTGTGCGGTCCTGTTTGAGAG
Band lengths:
237-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types