GgaEX0010846 @ galGal4
Exon Skipping
Gene
ENSGALG00000007647 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr2:16182205-16186522:-
Coord C1 exon
chr2:16186482-16186522
Coord A exon
chr2:16184623-16184763
Coord C2 exon
chr2:16182205-16183397
Length
141 bp
Sequences
Splice sites
3' ss Seq
GATTACTCATTTATTGACAGTCT
3' ss Score
4.17
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
AAATCAATACAAGATGAAAAACGGAAACCAAGAAAAGAAAG
Seq A exon
TCTGGGCAAGGTGCTAGATTTAGATATCTACTACCATGAAATTTCATCTACTGGTTCCACCTCAAAGGACAGCAGCTCTACCACAAAAAGGAAGAGACATCCAGTCGAGCGCAGAACTTCAGCTTTAAGAGCTACTGAGAG
Seq C2 exon
GTCAAGGGTTGCGGAGAGCCCCCTGGAAGAGAGCAGAGCGGAAGATAATCCCTATGACTACCGGAGGCTGCTGCGGAAGACCTCGCAGCGCCGGCGCCTTATCCAGCAGTTCTAGCCCCGCTGCCGTTTGCTGTTATTAGCATCATCTTTTGTATCATTTTATACCACATGCTTCCTTTTTTTTTTCTTCCTTTTTCTTTTTTTTTTAAATCTCTGACATTTCAGGTTTACAACATGTGTGTTCATGTCAGTACGAATTACTGTAGTTTACAGCCCAACACCGATGCAAAGGGACACCGTCACTCCTGGCATATACCCCTAAAAAAATAAGAAATCAGGTTTCCTTCAGATACCGCTCCTGCATCTTAAAATTATTAAGCATTAAGCAGCCTAAATGTAGGTTACCTTCCTCGGCGTGTGTTGTTTTCCTCTCTGCATTTAATCACTCTTACCCAATTAAAATAGACCATTTAGTTTATCATTTCCTCATTAAGCCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007647-'38-41,'38-40,39-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.708 C2=0.789
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAACGGAAACCAAGAAAAGA
R:
CACATGTTGTAAACCTGAAATGTCA
Band lengths:
266-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]