BtaEX0023563 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26924889-26932201:+
Coord C1 exon
chr13:26924889-26924929
Coord A exon
chr13:26926469-26926612
Coord C2 exon
chr13:26932084-26932201
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTGGTCATTTGCAGTCA
3' ss Score
7.96
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAATCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGATAG
Seq A exon
TCAGGGGAAATTATTAGATCTGGAGGATTTCTATTATAAGGAGTTTTTGCCCAGTCATCCTGGACCAAAGGACCACAACCCTAGTTTAAGAGAACGAAGACAACAGCAAGAACTCCAGAACCAATGTTTCAAAGCTGATGAAAG
Seq C2 exon
GTGCTGGGCGGCGGAGGACTGCGTGGAGGAGGAGAATGGGCCCGCCGCAAACCCCTACGACTACAGGAGGCTCCTGCGCAAAACCTCCCAGCGCCGGCGGCTCGTTCAGCAGGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123-'31-38,'31-37,32-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.510 C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGAAGAAAAACGAAGACCA
R:
CGGCGCTGGGAGGTTTTG
Band lengths:
130-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development