HsaEX0041174 @ hg19
Exon Skipping
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:7601]
Coordinates
chr10:26490194-26501456:+
Coord C1 exon
chr10:26490194-26490234
Coord A exon
chr10:26491893-26492036
Coord C2 exon
chr10:26500772-26501456
Length
144 bp
Sequences
Splice sites
3' ss Seq
GTTTATGTGTTCATTTACAGTCA
3' ss Score
8.18
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AAGTCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGACAG
Seq A exon
TCAGGGAAAATTATTAGATTTGGAAGATTTCTATTATAAGGAATTTTTGCCCAGTCGTTCTGGACCAAAGGAACATAGCCCTAGTTTAAGAGAACGAAGACCACAGCAAGAACTCCAGAATCAATGTATTAAGGCTAATGAAAG
Seq C2 exon
GTGCTGGGCGGCGGAGAGCCCCGAGAAGGAGGAGGAGAGAGAGCCAGCAGCCAACCCCTACGACTTCAGGAGGCTCCTGCGCAAAACCTCCCAGCGCCGGCGCCTCGTCCAGCAGTCCTAACCGTTCAACGAGGCAGTCACCGCCGTCGGAAGGCGCTGGAGCCTGCGGGGCAGCAGGGGCCAAGCAGGCACTCTGGGGCTGGCACCAGCAGGCACTGAAGCTGCGGCCCTGATCTCCGCAGAGGCTGCCTGCTGCGCTCGGCCCTCAAGTGCCCGGGCCGGCCTTCGTGCTCCGAAACAAGAGACCTGGGAGCCCTCGGGAAACCTCCCCCGACGCTCTCTCTCGGAACTCCCGCACCCTCCTTTCTCACCAGCCCGCCAGTTGTGGCAACCCTGTCCTTGTTCCCCTAATCTATCACTTTGTTCTTTTTTTTTGTGACTCCTGTGGACTCCACTGCGCCTGGGATCTCGCCAACCCCTCTCTCATTTGGGGTGACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777_MULTIEX1-17/17=16-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=0.449 C2=0.725
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0006316=Myosin_head=PD(0.4=1.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGACCAAGGAAAGACAG
R:
CAGCTTCAGTGCCTGCTGG
Band lengths:
245-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)