RnoEX0059022 @ rn6
Exon Skipping
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84160986-84166072:-
Coord C1 exon
chr17:84165901-84166072
Coord A exon
chr17:84162196-84162288
Coord C2 exon
chr17:84160986-84161135
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCCTTTCGGTGAAAGACC
3' ss Score
3.45
5' ss Seq
CTGGTATTT
5' ss Score
3.5
Exon sequences
Seq C1 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
Seq A exon
ACCTTAAAGTGTGGCGTACAGATCCCGGATCCATCTTCGACATTGACCCCCTGGAGGACAATATTCAGTCTCGAAGTCTCCATATGCTCTCTG
Seq C2 exon
AAAAGGCAAGTCAGTACCAGAGCCGCCTGTCTCGCTCACACTCTGGCAGCACTTTTGGTACGGGTCTGGGAGATGACAAGTCAGAGATCTCCGAGCTCTACCCTAGCTTTTCCTGTTGCAGTGAGGTAACAAGACCATCTGATGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-'70-55,'70-54,71-55
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.416 A=0.250 C2=0.490
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTGTGGACGATCCTGTG
R:
AAAGTGCTGCCAGAGTGTGAG
Band lengths:
179-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]