DreEX6036156 @ danRer10
Exon Skipping
Gene
ENSDARG00000032630 | neb
Description
nebulin [Source:ZFIN;Acc:ZDB-GENE-041111-216]
Coordinates
chr9:22997933-22998829:-
Coord C1 exon
chr9:22998643-22998829
Coord A exon
chr9:22998267-22998359
Coord C2 exon
chr9:22997933-22998064
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGTTTCGTTTTTTCTCAAAGACT
3' ss Score
6.65
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCAAATACCACCAGGACTTTGAGAAGAGTAAGGGCAGCTTCACCCCCACCATCTCTGACCCAGTAACTGAGCGTGTGAAGAGGAACACCCAGGACTTCAGTGATATCAACTACCGTGGCATCCAGAGACGTGTGGTGGAGATGGAGAGGAAACGTGCCGAGGAGCACGATCAGGAGACCATCACTG
Seq A exon
ACTTGCGTGTGTGGCGCACAAACCCTGGCTCTGTCTTTGACTATGACCCTGCCGAGGACAACATCCAGTCCAGAAGTCTTCACATGATGTCAG
Seq C2 exon
TTCAAGCCCAGCGCCGCAGCAAGGAGCACTCGCGCTCCACCAGTGCAATGAGTGGTGTGGGTGATGAGAAGTCAGAGGTGTCTGAGAACGTGGACCGCTACAGCAATGGCTTTGCCATCTCCGCTTTACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032630-'153-161,'153-160,154-161=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=0.707 C2=0.697
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGAAGAGGAACACCCAG
R:
ACACCACTCATTGCACTGGTG
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]