BtaEX6009779 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006907 | NEB
Description
nebulin [Source:HGNC Symbol;Acc:HGNC:7720]
Coordinates
chr2:44747718-44749215:+
Coord C1 exon
chr2:44747718-44747901
Coord A exon
chr2:44748046-44748138
Coord C2 exon
chr2:44749069-44749215
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCCTTAATCTCACTTTCAGGTT
3' ss Score
11.11
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGAAGTATCATGAAGACTTTGAGAAACACAAGGGTTGCTTCACACCGGTGGTGACAGACCCCATCACTGAGAGAGTGAAGAAGAACACACAGGACTTCAGTGACATTTGCTACCGGGGTATTCAGAGGAAAGTGGTAGAAATGGAACAGAAACGGAATGACCAGGATCAGGAAACTATTACAG
Seq A exon
GTTTACGCGTCTGGCGTACCAATCCTGGCTCAGTTTTTGACTATGATCCAGCAGAAGACAATATTCAGTCCCGAAGTTTACACATGATTAATG
Seq C2 exon
CACAAGCTCAGCGCCGGAGCCGGGAGCAGTCTCGATCAGCCAGTGGGCTGAGCATCAGTGGTGGTGAGGAGAAGTCTGAGCATTCAGAAGCTGCCCACCTCTCTACCTACAGTGACGGGGGCGTCTTCTTCTCTGCAGCCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006907-'176-183,'176-180,177-183=AN
Average complexity
A_S
Mappability confidence:
90%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.625 C2=0.660
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACCGGGGTATTCAGAGG
R:
TAGAGAGGTGGGCAGCTTCTG
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]