RnoEX0059006 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37663914-37665555:-
Coord C1 exon
chr3:37665372-37665555
Coord A exon
chr3:37665031-37665123
Coord C2 exon
chr3:37663914-37664066
Length
93 bp
Sequences
Splice sites
3' ss Seq
AACACTGGCTTTCCTTTCAGGCC
3' ss Score
10.26
5' ss Seq
ATGGTACGC
5' ss Score
8.57
Exon sequences
Seq C1 exon
GTGAAATATCATGAAGACTTTGAGAAACACAAAGGCTGTTTCACACCGGTGGTGACAGACCCTATCACTGAACGAGTAAAGAAAAACACACAGGACTTCAGTGACATTAACTACCGAGGTATTCAGAGAAAAGTGGTGGAAATAGAACAGAAGCGGAATGACCAGGATCAAGATACCATTACAG
Seq A exon
GCCTGCGTGTCTGGCGGACTAACCCTGGTTCAGTTTTTGATTATGACCCGGCAGAAGATAACATCCAGTCCCGAAGTTTGCACATGGTCAATG
Seq C2 exon
TCCAAGCTCAACGCCGGAGCCGGGACCAGTCCAGATCTGCCAGTGCACTGAGCATCAGTGGGGGTGAGGAGAAGTCTGAGCACTCGGAGGCCGCAGACCAGCGCCTTTCCACATACAGTGACGGAGGTGCCTTCTTCTCTGCAACCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'163-174,'163-173,164-174
Average complexity
S
Mappability confidence:
86%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.656 C2=0.673
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGCGGAATGACCAGG
R:
AAGGCACCTCCGTCACTGTAT
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]